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1

Effect of TFE on the Helical Content of AK17 and HAL-1 Peptides: Theoretical Insights into the Mechanism of Helix Stabilization

Vymětal, Jiří, Bednárová, Lucie, Vondrášek, Jiří

Journal:

Journal of Physical Chemistry B

Year:

2016

Language:

english

File:

PDF, 4.15 MB

english, 2016

2

AMBER and CHARMM force fields inconsistently portray the microscopic details of phosphorylation

Vymětal, Jiří, Jurásková, Veronika, Vondrasek, Jiri

Journal:

Journal of Chemical Theory and Computation

Year:

2018

Language:

english

File:

PDF, 2.38 MB

english, 2018

3

Cardiovascular events in patients with systemic lupus erythematosus

Smržová, Andrea, Horák, Pavel, Skácelová, Martina, Žurek, Martin, Fryšáková, Ladislava, Vymětal, Jiří, Vaverková, Helena

Journal:

Year:

2014

Language:

english

File:

PDF, 547 KB

english, 2014

4

Cardiac amyloidosis: from clinical suspicion to morphological diagnosis

Flodrova, Pavla, Flodr, Patrik, Pika, Tomas, Vymetal, Jiri, Holub, Dusan, Dzubak, Petr, Hajduch, Marian, Scudla, Vlastimil

Journal:

Year:

2018

Language:

english

File:

PDF, 1.58 MB

english, 2018

5

Bioinformatic analysis and molecular modelling of human ameloblastin suggest a two-domain intrinsically unstructured calcium-binding protein

Jiří Vymětal, Ivan Slabý, Axel Spahr, Jiří Vondrášek, S. Petter Lyngstadaas

Journal:

European Journal of Oral Sciences

Year:

2008

Language:

english

File:

PDF, 1.89 MB

english, 2008

6

Sequence Versus Composition: What Prescribes IDP Biophysical Properties?

Vymětal, Jiří, Vondrášek, Jiří, Hlouchová, Klára

Journal:

Year:

2019

File:

PDF, 1.56 MB

2019

7

Insights into Unfolded Proteins from the Intrinsic ϕ/ψ Propensities of the AAXAA Host-Guest Series

Towse, Clare-Louise, Vymetal, Jiri, Vondrasek, Jiri, Daggett, Valerie

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 3.46 MB

english, 2016

8

Amyloid β Fibril Elongation by Monomers Involves Disorder at the Tip

Bacci, Marco, Vymětal, Jiří, Mihajlovic, Maja, Caflisch, Amedeo, Vitalis, Andreas

Journal:

Journal of Chemical Theory and Computation

Year:

2017

Language:

english

File:

PDF, 10.05 MB

english, 2017

9

Focused conformational sampling in proteins

Bacci, Marco, Langini, Cassiano, Vymětal, Jiří, Caflisch, Amedeo, Vitalis, Andreas

Journal:

The Journal of Chemical Physics

Year:

2017

Language:

english

File:

PDF, 16.80 MB

english, 2017

10

Contribution of Speckle Tracking to Estimation of Pulmonary Hypertension by Standard Doppler Echocardiography in Patients with Systemic Sclerosis and MCTD

Vymetal, Jiri, Hutyra, Martin, Smarzova, Andrea, Skacelova, Martina, Hermanova, Zuzana, Langova, Katerina, Horak, Pavel

Journal:

Rheumatology Current Research

Year:

2017

Language:

english

File:

PDF, 688 KB

english, 2017

11

Gyration- and Inertia-Tensor-Based Collective Coordinates for Metadynamics. Application on the Conformational Behavior of Polyalanine Peptides and Trp-Cage Folding

Vymětal, Jiří, Vondrášek, Jiří

Journal:

Journal of Physical Chemistry A

Year:

2011

Language:

english

File:

PDF, 6.96 MB

english, 2011

12

Intrinsically disordered protein domain of human ameloblastin in synthetic fusion with calmodulin increases calmodulin stability and modulates its function

Zouharova, Monika, Vymetal, Jiri, Bednarova, Lucie, Vanek, Ondrej, Herman, Petr, Vetyskova, Veronika, Postulkova, Klara, Lingstaadas, Petter S., Vondrasek, Jiri, Bousova, Kristyna

Journal:

International Journal of Biological Macromolecules

Year:

2020

File:

PDF, 341 KB

2020

13

Widespread evolutionary crosstalk among protein domains in the context of multi-domain proteins

Jakubec, David, Kratochvíl, Miroslav, Vymĕtal, Jiří, Vondrášek, Jiří, Srinivasan, Narayanaswamy

Journal:

Year:

2018

Language:

english

File:

PDF, 11.27 MB

english, 2018

14

Sequence Versus Composition: What Prescribes IDP Biophysical Properties?

Vymětal, Jiří, Vondrášek, Jiří, Hlouchová, Klára

Journal:

Year:

2019

Language:

english

File:

PDF, 1.56 MB

english, 2019

15

Like-Charge Guanidinium Pairing from Molecular Dynamics and Ab Initio Calculations

Vazdar, Mario, Vymětal, Jiři, Heyda, Jan, Vondrášek, Jiři, Jungwirth, Pavel

Journal:

Journal of Physical Chemistry A

Year:

2011

Language:

english

File:

PDF, 3.12 MB

english, 2011

16

Random protein sequences can form defined secondary structures and are well-tolerated in vivo

Tretyachenko, Vyacheslav, Vymětal, Jiří, Bednárová, Lucie, Kopecký, Vladimír, Hofbauerová, Kateřina, Jindrová, Helena, Hubálek, Martin, Souček, Radko, Konvalinka, Jan, Vondrášek, Jiří, Hlouchová, Klár

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 3.64 MB

english, 2017

17

Parametrization of 2,2,2-Trifluoroethanol Based on the Generalized Amber Force Field Provides Realistic Agreement between Experimental and Calculated Properties of Pure Liquid as Well as Water-Mixed Solutions

Vymětal, Jiří, Vondrášek, Jiří

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 2.20 MB

english, 2014

18

Amino Acid Interaction (INTAA) web server

Galgonek, Jakub, Vymětal, Jiří, Jakubec, David, Vondrášek, Jiří

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 1.19 MB

english, 2017

19

The DF-LCCSD(T0) correction of the φ/ψ force field dihedral parameters significantly influences the free energy profile of the alanine dipeptide

Jiří Vymětal, Jiří Vondrášek

Journal:

Chemical Physics Letters

Year:

2011

Language:

english

File:

PDF, 1.06 MB

english, 2011

20

Critical Assessment of Current Force Fields. Short Peptide Test Case

Vymětal, Jiří, Vondrášek, Jiří

Journal:

Journal of Chemical Theory and Computation

Year:

2013

Language:

english

File:

PDF, 2.36 MB

english, 2013

21

Influence of the load of nylon capsules on their passage through the digestive tract and specific gravity

Třináctý, Jiří, Homolka, Petr, Richter, Michal, Šustala, Martin, Vymětal, Aleš

Journal:

Reproduction Nutrition Development (EDP Sciences)

Year:

2002

File:

PDF, 154 KB

2002

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